AI-Driven Integration of Single-cell Genomic Knowledge for Diabetes Research

Kudtarkar P et al.

AI in Molecular Biology, Keystone Symposia (2025)

An integrated map of cell type-specific gene expression in pancreatic islets

Elgamal, Ruth; Kudtarkar, Parul; Melton, Rebecca; Mummey, Hannah; Benaglio, Paola; Okino, Mei-Lin; Gaulton, Kyle J

Diabetes (2023)

Leveraging type 1 diabetes human genetic and genomic data in the T1D Knowledge Portal

Kudtarkar, Parul; Costanzo, Maria; Sun, Ying; Jang, Dongkeun; Koesterer, Ryan; Mychaleckyj, Josyf C; Nayak, Uma; Onengut-Gumuscu, Suna; Rich, Stephen S; Flannick, Jason A

PLoS Biology (2023)

Echinobase: an expanding resource for echinoderm genomic information

Kudtarkar, Parul; Cameron, R. Andrew

Database: The Journal of Biological Databases and Curation (2017)

Do echinoderm genomes measure up?

Cameron, R Andrew; Kudtarkar, Parul; Gordon, Susan M; Worley, Kim C; Gibbs, Richard A

Marine genomics (2015)

Cost-effective cloud computing: a case study using the comparative genomics tool, roundup

Kudtarkar, Parul; DeLuca, Todd F; Fusaro, Vincent A; Tonellato, Peter J; Wall, Dennis P

Evolutionary Bioinformatics (2010)

Cloud computing for comparative genomics

Wall, Dennis P; Kudtarkar, Parul; Fusaro, Vincent A; Pivovarov, Rimma; Patil, Prasad; Tonellato, Peter J

BMC bioinformatics (2010)

Genetic association and machine learning improves discovery and prediction of type 1 diabetes

McGrail, Carolyn; Kudtarkar, Parul; et al.

medRxiv (2024)

Single cell multiome profiling of pancreatic islets reveals physiological changes in cell type-specific regulation associated with diabetes risk

Mummey, Hannah M; Kudtarkar, Parul; et al.

bioRxiv (2024)

Sex-specific regulatory architecture of pancreatic islets from subjects with and without type 2 diabetes

Qadir, Mirza Muhammad Fahd; Kudtarkar, Parul; et al.

The EMBO Journal (2024)

The Type 2 Diabetes Knowledge Portal: An open access genetic resource dedicated to type 2 diabetes and related traits

Costanzo, Maria C; Kudtarkar, Parul; et al.

Cell metabolism (2023)

Cardiovascular disease knowledge portal: a community resource for cardiovascular disease research

Costanzo, Maria C; Kudtarkar, Parul; et al.

Circulation: Genomic and Precision Medicine (2023)

Single-cell chromatin accessibility identifies pancreatic islet cell type– and state-specific regulatory programs of diabetes risk.

Chiou, Joshua; Kudtarkar, Parul; et al.

Nature Genetics (2021)

Single-cell multiomic profiling of human lungs reveals cell-type-specific and age-dynamic control of SARS-CoV2 host genes

Wang, Allen; Kudtarkar, Parul; et al.

Elife (2020)

Developmental effector gene regulation: Multiplexed strategies for functional analysis

Wang, Lijun; Kudtarkar, Parul; et al.

Developmental biology (2019)

AMP CMD Portals

AMP CMD Parliament Meeting (2025)

Single Cell Maps and Analysis Tools in CMDGA

AMP CMD Parliament Meeting (2024)

Gene Expression Integration and Representation in CMDGA/KP

AMP CMD Parliament Meeting (2023)

Representing Genomic Perturbation Studies in CMDGA

AMP CMD Leadership Conference (2022)